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Whisk together the flour, baking powder, baking soda and salt. Set aside.
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Cream the peanut butter and shortening until well blended. Add the sugar and cream until fluffy. Beat in the eggs, one at a time. Then beat in the vanilla.
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Add the flour in 3 installments, mixing in slowly. With the last installment, also add the chocolate chips. Mix just until completely blended. Place in the refrigerator for a minimum of 30 minutes--they will bake nicely after 30 minutes, but my best cookies came with the dough that had chilled at least overnight. It can rest in the fridge for up to 3 days.
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Preheat the oven to 350 F. Line your cookie sheet or sheets with parchment of silicone.
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Scoop fairly large, about 2-inch diameter, balls of cookie dough onto the cookie sheets. Sprinkle coarse salt to taste on each ball of cookie dough. I baked 6 to a pan to give you an idea. Bake for 12-16 minutes, until lightly browned and starting to crack on top. Let cool on sheets for 5 minutes before transferring to cooling rack.