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Preheat the oven to 375 F. Line 2 baking sheets with parchment paper or silicone and set aside.
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Dump the pumpkin, eggs, brown sugar, oil and molasses into a large bowl. Whisk together just until smooth. Switch to a silicone spatula, and beat in the salt, spices, baking powder and baking soda. Fold in the flour gently and then beat for 1 minute until smoothly combined.
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I prefer a smaller whoopie pie, so I used a mid-sized cookie scoop to scoop out the batter onto the prepared sheets, leaving 2 inches between "blobs" for spreading. You could go as high as a 1/4 cup scoop.
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Bake the cookies for 8-12 minutes (depending on what size scoop you used), or until they feel firm to the touch and have that slightly dried out look (instead of looking wet and batter-like). Let the cookies cool for 5 minutes on the sheet before transferring to a cooling rack to cool completely.
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While the cookies are baking and cooling, begin working on the filling.
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Pour the water over the gelatine in a small microwaveable bowl. Set it aside to soften.
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Beat the butter and cream cheese until fluffy, using a hand held or stand mixer. Heat the softened gelatine very gently (about 30% power, short increments) in the microwave to dissolve the gelatine--stir it occasionally. Set aside.
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Add half of the confectioners' sugar to the fluffy butter mixture and beat it in. Beat in the dissolved gelatine. Add the remaining confectioners' sugar and beat it smooth.
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When the cookies have cooled, assemble the whoopie pie by spreading a tablespoon or 2 of filling onto the bottom of one cookie and covering it with another cookie, bottom side down towards the filling.